Summary of obtained results and closing

Overview

Teaching: 10 min
Exercises: min

Questions

• What is the best assembly?

• How did you come to that conclusion?

Objectives

During this workshop we focused on:

1. Setting up virtual machine with Ubuntu
2. Performing read quality control by mapping reads to a reference sequence
3. Creating de novo assemblies with Canu and Platanus with PacBio, Nanopore and Illumina data
4. Comparing the results of the assembly using mummerplots
5. Validating the assemblies by mapping genes and RNASeq data to the contigs

Key Points

Used applications